f74b4e12498fffd8239b0f03f68fa80d *DESCRIPTION
5cc7b13feb8e82c2bb6293d0c82a23d5 *NAMESPACE
834b64d0e71b6ceb936fcbd174f515e8 *NEWS
06bf6b152bd173de54a62625195a0238 *R/covml.R
24319befd5c1e4c572200e4e9f3a1d2a *R/ctCheckFit.R
a518782527e89b7b742d9da57fca4554 *R/ctChisqTest.R
a2ce187334f37fdd372e69461ee0b84a *R/ctDataHelp.R
c8730672f1f1d368e9a91830d3085a47 *R/ctDeintervalise.R
8d8c36222e3974bd172f3c0269be8ace *R/ctDiscretePars.R
fe4f1ca0cab0ca43caf90bfd869fd47b *R/ctDiscretiseData.R
955455f09da670bca8bbb31c6881ab7b *R/ctExtractComplexMatrix.R
8958ae66413ad7f7a5c93d5e29049d25 *R/ctFitMultiModel.R
071b4e65b31a8f5aa1d92ad151047ec4 *R/ctGenerate.R
5c67a6624a25d8194f681d218a16bb0f *R/ctIndplot.R
2aace1b30db0306891232d9fe087820a *R/ctIntervalise.R
76ecd8c54329a3c87f541447060862e2 *R/ctJacobian.R
f81e929e4e3392f1a496e0d177c7ff81 *R/ctKalman.R
8924152843829fdcfbefd1c79c482127 *R/ctLOO.R
7a2a9c220ace987a7c51de403076397c *R/ctLabel.R
18ae795b91c170d15554192540e6bfe3 *R/ctLongtowide.r
7bae2743c59e8e3d155cb89fbe2fd2c5 *R/ctModel.R
8e14658553337821616ac0bf4f6c343b *R/ctModelHigherOrder.R
a0b9908d8b133a527ec31528c6aec97b *R/ctModelLatex.R
d316b8a3609acda69d09d5ed3f0c0c8a *R/ctPlotArray.R
638b365e1493fc50dff62cb60d60dd92 *R/ctStanContinuousPars.R
76748c190eed4ca72041289b1736ef2d *R/ctStanData.R
95866254d61c4db0185f1deae1300cda *R/ctStanFit.R
bb2c35526c7735b20a4ef6c756c76988 *R/ctStanGenerate.R
8fc58bff8b84d42569204dcd9f2aaa39 *R/ctStanGenerateFromFit.R
150ada06084db62b9664f857cd1d3396 *R/ctStanKalman.R
1402962785851ea6ed63af814d6e4e97 *R/ctStanModel.R
f334b085757a3ce75cc4eaf5e9fb3d5b *R/ctStanModelWriter.R
078567d0285cb95a92509a2ccb7b26e9 *R/ctStanParMatrices.R
08792e4904d3af5b44963d2d83709cb0 *R/ctStanPlotPost.R
27f01dc45f4b014ca31404345fab50d5 *R/ctStanPostPredict.R
60b606d5d3ec4b9449e1a69e6136b4d3 *R/ctStanProfileCI.R
aea17ed9fe5305b74efd8c2daf19b490 *R/ctStanTIpredeffects.R
857739fb0d7083171526ad031e7cb03c *R/ctSummarise.R
36fda003ae2abd189b787e2479105e9d *R/ctTIpredAuto.R
d4a53bc0b3a6e1d483487abfe1fb19d1 *R/ctTransforms.R
127e0a5834908e180a18cd00dd4f4894 *R/ctWideToLong.R
c2a9ab1a2ddf47d81bad6b65e9354803 *R/ctdataupdate.R
84f8ae52969eca1898342673cd2436b8 *R/ctsem.R
49edf1b5050abbabc7faa1be24b304b2 *R/ctsemUtils.R
6c166a702e7a1190a47bf90a07ca25aa *R/ctsmupdate.R
6a215b7b8bb18c2aa0c0ca2b050b112d *R/databasedTIpreds.R
537b0f56ed5f4e8dc7758b968c5c9634 *R/extract.ctStanFit.R
ea77592db6047ac69d04e33cf80228ab *R/isdiag.R
b733494d3b075d007185f6a6144e5ef6 *R/listOfMatrices.R
fe08a898d699317e4502b4b1ac1350ff *R/modelchecking.R
83599d37d815fc58e5603b8bab113604 *R/plot.ctStanFit.R
476a6bc42074ff585a2496897ee5ebe3 *R/plot.ctStanModel.R
f3c622168c459c62cc528688a7719bb0 *R/plothelpers.R
e1e13ae03f47ec40c7a82f3ab1f2c28c *R/priorcheck.R
56fabb27e0d6fd63dfecde7f84ff0450 *R/sdpcor2cov.R
ff9ee73734d7b783e9d7448b8d7dbc31 *R/sgd.R
c8de03362fa3347946aa00f6672fc4ea *R/stanWplot.R
eede2e26f6be2ca9dfd7301e84b0190b *R/stan_checkdivergences.R
b90f479be8026efa4c4e10e8694817ee *R/stan_confidenceRegion.R
e847e82eb633d5b616e60148f93e557d *R/stan_postcalc.R
3caf351ab81fec5b314700b3c8c7465e *R/stan_unconstrainsamples.R
77f8f660cd17afcefea81df9f80e9298 *R/stanmodels.R
47a487870d8bb26162124d70b7416a1e *R/stanoptimis.R
e8b4ed6d2cdd99f87863c0b00253c108 *R/summary.ctStanFit.R
2661d9abe89ee2fff86bd2fdd3945f03 *R/tformshapes.R
86b7546ad86c39a1fa29e171b05dff40 *R/zzz.R
af1537859ce41c5da35e206945853a9f *README.md
58f0bba781e7bb45d6c6723ef3c0952e *build/vignette.rds
55ca427c9d30e9db61fca57d83ced561 *data/AnomAuth.rda
61348d32218bea3f4ceef78fc38e576e *data/Oscillating.rda
d9fed372e9231549aa06d7dc4db2e2c1 *data/ctExample1.rda
f0d6365170b8b33ce8b83c92d5bcf675 *data/ctExample1TIpred.rda
d7e1c504974951869fa04bc657d15bcc *data/ctExample2.rda
93087907c9803f4448318d40e7255005 *data/ctExample3.rda
41475f11421cbea0cec95aaf93574c14 *data/ctExample4.rda
dfdf3234b95dbab3eb42c8aea710a201 *data/ctstantestdat.rda
ce999438f41fb741d7ee1f6cc006b21e *data/ctstantestfit.rda
fa0c3e77a75242b33409e49b153434f9 *data/datastructure.rda
69bf503e1c8a947c9a358186759c2fe5 *data/longexample.rda
efff50095c89aaaca5e85e36b39ba822 *inst/CITATION
04d57d1965f781fd5a808f7bd1828661 *inst/doc/hierarchicalmanual.pdf
78afde3a8e575177c0919a417f967a21 *inst/doc/hierarchicalmanual.rnw
217f7adb44174ca91df89c841232f607 *man/AnomAuth.Rd
a508fbdffa721d4344fa05277899a740 *man/Oscillating.Rd
223041aff3c5db78f2ddfccf6620be70 *man/ctAddSamples.Rd
755ab05e0ab8de9c7bac243661552011 *man/ctCheckFit.Rd
c7af2775168bd649c5a7c888e849963e *man/ctChisqTest.Rd
5cbfb1a0e84e1954461f43f5bc5c6414 *man/ctCollapse.Rd
f956d8cd12074eaf15910a5e5250509a *man/ctDeintervalise.Rd
081f353cf52aba980d3d15f3a948fff1 *man/ctDensity.Rd
8f4a57bdb0322c23612952edfeff60f8 *man/ctDiscretiseData.Rd
9f63cdd925e515c3b41afaba95478cea *man/ctDocs.Rd
3c52247a43b6395ba28b527835d43aec *man/ctExample1.Rd
9009d89a494f1f962b6e31581736c400 *man/ctExample1TIpred.Rd
eefaa7bb7c1abc6e2d6e61637d887ca8 *man/ctExample2.Rd
ed861eb67ee4574c314fd28a3c1149eb *man/ctExample2level.Rd
f80bf8a261004f07b05088438a909d77 *man/ctExample3.Rd
aa95d47e90e14cf3d9f1889c505e51b3 *man/ctExample4.Rd
ffee74ac85c769d8bd47bfca88035608 *man/ctExtract.Rd
e50c01eb0dbb5bb37f2491dc15520c2a *man/ctFit.Rd
eb24fef0d94b99b64fada7967e14d07c *man/ctFitMultiModel.Rd
30dbc9d3dc9d74aef28b80a73c2a55e2 *man/ctGenerate.Rd
49ef76733ba88e61cd6fce73d7084331 *man/ctIndplot.Rd
bffec3366061a46240ff87415b8513d7 *man/ctIntervalise.Rd
8ca051ab3f26ced873e97172059ff4d5 *man/ctKalman.Rd
7bdbd7e8832ba75fcc2c4f0f54962c7c *man/ctLOO.Rd
fdf0d421afb0c2551574f39b289c80bd *man/ctLongToWide.Rd
f1d918446b51e55b93151056277eed6b *man/ctModel.Rd
533fa902cdea1e88f2fad207f2efbb4e *man/ctModelHigherOrder.Rd
c42985fcc9c6df3df4d7304622813033 *man/ctModelLatex.Rd
1bb64f821b92d06da1862780e6085bcb *man/ctPlotArray.Rd
b791f69dba32be77df1a724959ed3328 *man/ctPoly.Rd
9e690ca325743204c6ff8940d89e7a18 *man/ctStanContinuousPars.Rd
9ae4b87967bfbda5b2a4479dd57a89c6 *man/ctStanDiscretePars.Rd
eacf3ba30216d4cf4ca0915432557673 *man/ctStanDiscreteParsPlot.Rd
4ec65d2d2422814742492f0e72561d3e *man/ctStanFit.Rd
8a02dfae534e74b00d33d78d56ca6313 *man/ctStanFitUpdate.Rd
6dc7cac2f377c2406c9d737d4594fcbd *man/ctStanGenerate.Rd
9be2cca76a739a421db4e2dfd41cc2f6 *man/ctStanGenerateFromFit.Rd
b1cd85020e27547cf88359829a63225d *man/ctStanKalman.Rd
b47fcf8dc352787eaa4a1879b8fa5933 *man/ctStanModel.Rd
3f11612ed36657526f6b1bb4f00e3db9 *man/ctStanParnames.Rd
513a9141fcfb378a8a8fc84f93637636 *man/ctStanPlotPost.Rd
2a2d5fa21c6e09901c469a212ce9271b *man/ctStanPostPredict.Rd
e4e9e9c39acc8f02c34acb414a7e4a09 *man/ctStanSubjectPars.Rd
573c26805629128578b1dc6ffd661dcc *man/ctStanTIpredeffects.Rd
5c9f83d13bb862c210a0ceb0bd8aa459 *man/ctStanUpdModel.Rd
e6024f1175c290ecab174a3ee4afe0ed *man/ctWideNames.Rd
413502996a66363df62d3cd902b122b4 *man/ctWideToLong.Rd
4ff1bbdfb9a1ee9d31f169018414d075 *man/ctsem.Rd
173b772ae18259131110c5f8c5a75606 *man/ctstantestdat.Rd
be455f91e55b07d97d208ca1fe1301c6 *man/ctstantestfit.Rd
5dc541c29d640ee8b6bf08f07a998b1b *man/datastructure.Rd
da026582cc6cd10b89939610637445cf *man/inv_logit.Rd
6483a112e31b366eb029a0f55c3186fe *man/isdiag.Rd
a41e151508873c8f8f0937c5aa484547 *man/log1p_exp.Rd
088135b9671483355b556fa2c56d825d *man/longexample.Rd
705cae2f744c0feff0113b3ac43f2d13 *man/plot.ctKalmanDF.Rd
f8c05bee4802c0f89e533278582c7145 *man/plot.ctStanFit.Rd
a7f13e1d9cc403057b3ca9c9159aae1d *man/plot.ctStanModel.Rd
b7e85c251453724a595b0b7e9759bbfe *man/sdpcor2cov.Rd
14886a555b46a0d21059fbe7195bf41e *man/stanWplot.Rd
e8722332a47c6eb923f838ea97531e4a *man/stan_checkdivergences.Rd
2d5f13438925a5c0dc3444ff928ce4a4 *man/stan_postcalc.Rd
a456f848a66f9ceabcfd08df7f0bc749 *man/stan_reinitsf.Rd
f4ccd3a5e426fac2d63de25a21774ac0 *man/stan_unconstrainsamples.Rd
d51cbd5ebce85af689abc71d52f0265e *man/standatact_specificsubjects.Rd
222e99b3f3b3ab8065727706cf1cf1d4 *man/stanoptimis.Rd
e39dcbc80d722ac76e7dbb490965f2f7 *man/summary.ctStanFit.Rd
72f40bc2ad9eaf5a28469d83a7602777 *man/w32chk.Rd
58d089e286bffa79afa59610621eb27f *src/Makevars
56ff97d88df2fe9b677203f9360ef5bb *src/Makevars.win
ad47f88f0dfcf6c425d409408194a6b3 *src/init.cpp
4a937e0ef2274ad1cc7580c43345c8ca *src/stan_files/chunks/license.stan
ae1f03b69e5d3ccf3bcb2fe508a13ae9 *src/stan_files/cov.stan
18628af660164ae653226b81d27f9127 *src/stan_files/ctsm.stan
1459cef95ebdb4220f4b5c00cb995688 *src/stan_files/ctsmgen.stan
76ca350c5cce00f4bb99cf4538fd7de8 *tests/testthat.R
19a01e0ed609e8adba1fe67f6bb257d7 *tests/testthat/test-corrcheck.R
0d6010690ff26444e08f433a874fa877 *tests/testthat/test-ctLOO.R
7c4da451ca21b62f23f9416da2c90922 *tests/testthat/test-ctRaschExampleTest.R
c82e241c8e0ad519ec7838d2a28345f4 *tests/testthat/test-dtVct.R
eafe037ee02d4c19b94f04a4d58371d3 *tests/testthat/test-fixedvalsunspot.R
5b9e62bd87a8582138b4904cba3cbd42 *tests/testthat/test-intervalise.R
ada4fd5e1c790fcca29267208d1fa69b *tests/testthat/test-knownFits.R
cd37eaccd408a3434a804a3d5cb3910c *tests/testthat/test-nonlinearVlinear.R
1670a8c1d40ff9a2f3bd2689f26244ad *tests/testthat/test-reshaping.R
1e8d7fa746dcf69dbcbf9cb88b5504b5 *tests/testthat/test-runExamples.R
65c682b6c095dd5e057d46c9237ddb31 *tests/testthat/test-stantipred.R
86193a05dd13ceeae16128c224f48388 *tests/testthat/test-sunspots.R
9e7568c8db3abd4455143a28927f5d08 *tests/testthat/test-timevarying.R
452ad2b459bdba44e523271ec0d3cbf6 *tests/testthat/test-ukfpoptest.R
498a2dd5a7619f1a7bed0e897098e5a6 *tools/make_cc.R
78afde3a8e575177c0919a417f967a21 *vignettes/hierarchicalmanual.rnw
5ef0c51020eb3574db19c92d2c4779fc *vignettes/hierarchicalrefs.bib
