Package: HDF5Array
Title: HDF5 backend for DelayedArray objects
Description: Implement the HDF5Array, H5SparseMatrix, H5ADMatrix, and
	TENxMatrix classes, 4 convenient and memory-efficient array-like
	containers for representing and manipulating either: (1) a conventional
	(a.k.a. dense) HDF5 dataset, (2) an HDF5 sparse matrix (stored in
	CSR/CSC/Yale format), (3) the central matrix of an h5ad file (or any
	matrix in the /layers group), or (4) a 10x Genomics sparse matrix.
	All these containers are DelayedArray extensions and thus support all
	operations (delayed or block-processed) supported by DelayedArray
	objects.
biocViews: Infrastructure, DataRepresentation, DataImport, Sequencing, RNASeq,
	Coverage, Annotation, GenomeAnnotation, SingleCell, ImmunoOncology
URL: https://bioconductor.org/packages/HDF5Array
BugReports: https://github.com/Bioconductor/HDF5Array/issues
Version: 1.29.3
License: Artistic-2.0
Encoding: UTF-8
Author: Hervé Pagès
Maintainer: Hervé Pagès <hpages.on.github@gmail.com>
Depends: R (>= 3.4), methods, DelayedArray (>= 0.27.2), rhdf5 (>= 2.31.6)
Imports: utils, stats, tools, Matrix,
	rhdf5filters, BiocGenerics (>= 0.31.5), S4Vectors, IRanges,
	S4Arrays (>= 1.1.1)
LinkingTo: S4Vectors (>= 0.27.13), Rhdf5lib
SystemRequirements: GNU make
Suggests: BiocParallel, GenomicRanges, SummarizedExperiment (>= 1.15.1),
	h5vcData, ExperimentHub, TENxBrainData, zellkonverter, GenomicFeatures,
	RUnit, SingleCellExperiment
Collate: utils.R
	H5File-class.R
	h5ls.R
	H5DSetDescriptor-class.R
	h5utils.R
	h5dimscales.R
	uaselection.R
	h5mread.R
	h5mread_from_reshaped.R
	h5writeDimnames.R
	h5summarize.R
	HDF5ArraySeed-class.R
	HDF5Array-class.R
	ReshapedHDF5ArraySeed-class.R
	ReshapedHDF5Array-class.R
	dump-management.R
	writeHDF5Array.R
	saveHDF5SummarizedExperiment.R
	H5SparseMatrixSeed-class.R
	H5SparseMatrix-class.R
	H5ADMatrixSeed-class.R
	H5ADMatrix-class.R
	TENxMatrixSeed-class.R
	TENxMatrix-class.R
	writeTENxMatrix.R
	zzz.R
